Projects per year
Personal profile
SUMMARY of research interests (100 words)
Skin is the largest organ in the body and the first line of defence against harmful microbes. A better understanding towards skin in health and disease is important, as skin disorders are extremely common. It has been estimated that approximately 900 million people in the world are affected by skin disorders at any time.
Skin is a complex tissue comprised of a range of distinct cell types, which can make the interpretation of high-throughput experimental data from skin difficult. In addition to having previously derived genes associated with various cell types within skin through coexpression network analysis using RNA sequencing (RNAseq) data from normal skin, I have characterised gene expression patterns associated with the formation of skin appendages (hair follicles and fingerprints) during development using single-cell RNA sequencing. I am particularly interested in the interaction between cells or host-microbes at a single-cell level with spatial context. A better understanding of how genes contribute to different physiological states of the skin will significantly benefit the interpretation of data in dermatological research.
My group is interested in improving our understanding towards gene expression changes in skin in development, health, perturbed physiology (pigmentation, wound healing, and aging), disease (chronic wounds, non-communicable skin diseases, and melanoma), and different species.
The work my group does is predominately bioinformatics-based; we have experience in a range of techniques, including but not limited to single-cell RNA sequencing, spatial transcriptomics, microbiome analysis, network analysis and data visualisation.
Collaborations and top research areas from the last five years
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The broken system in chronic wounds: do our cells or bacteria stop our wounds from healing?
Shih, B. (Principal Investigator)
The Dowager Countess Eleanor Peel Trust
1/12/25 → 30/11/26
Project: Research
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The role of Gli similar transcription factors and the primary cilium in melanocyte development and melanoma phenotype switching
Mort, R. (Principal Investigator) & Shih, B. (Co-Investigator)
1/10/24 → 31/03/28
Project: Research
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Investigate the gene expression changes in atopic dermatitis-like skin inflammation and its resolution
Shih, B. (Principal Investigator), Saunders, A. (Principal Investigator) & Gatsiou, A. (Co-Investigator)
Project: Research
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Age‐Associated Inflammatory Monocytes Are Increased in Menopausal Females and Reversed by Hormone Replacement Therapy
De Maeyer, R. P. H., Sikora, J., Bracken, O. V., Shih, B., Lloyd, A. F., Peckham, H., Hollett, K., Abdelhamid, K., Cai, W., James, M., Pfeffer, P. E., Vukmanovic‐Stejic, M., Akbar, A. N. & Chambers, E. S., 30/11/2025, In: Aging Cell. 24, 11, 13 p., e70249.Research output: Contribution to Journal/Magazine › Journal article › peer-review
Open AccessFile -
Characterization of bovine and ovine basal-out and apical-out ileum organoids
Chapuis, A. F., Harte, T., Price, D. R. G., Faber, M. N., Anderson, W. M., Shih, B., Hope, J. C., Moore, J. & Smith, D., 31/07/2025, In: Royal Society Open Science. 12, 7, 250326.Research output: Contribution to Journal/Magazine › Journal article › peer-review
Open Access -
Dual single-cell and bulk RNA sequencing reveal transcriptional profiles underlying heterogenous host-parasite interactions in human peripheral blood mononuclear cells
Chandrasegaran, P., Faydaci, B., Shih, B. & Hassan, M. A., 24/06/2025, In: Frontiers in Immunology. 16, 1582645.Research output: Contribution to Journal/Magazine › Journal article › peer-review
Open Access -
Sociality and kinship constrain the free-mixing of pathogens in a wild mammal host population
Benton, C. H., Delahay, R., Shih, B., Kao, R. R., McDonald, R. A. & Hodgson, D. J., 31/07/2025, In: Proceedings of the Royal Society B: Biological Sciences. 292, 2051, 20251242.Research output: Contribution to Journal/Magazine › Journal article › peer-review
Open Access -
Transcriptomic characterisation of acute myeloid leukemia cell lines bearing the same t(9;11) driver mutation reveals different molecular signatures
Georges, E., Ho, W., Iturritza, M. U., Eory, L., Malysz, K., Sobhiafshar, U., Archibald, A. L., Macqueen, D. J., Shih, B., Garrick, D. & Vernimmen, D., 25/03/2025, In: BMC Genomics. 26, 1, 300.Research output: Contribution to Journal/Magazine › Journal article › peer-review
Open Access
Activities
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In2STEM
Shih, B. (Host), Kotsantis, P. (Host) & Dewar, C. (Host)
28/07/2025 → 1/08/2025Activity: Business or School/HEI Engagement › School Engagement
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In2STEM
Kotsantis, P. (Host) & Shih, B. (Host)
5/08/2024 → 9/08/2024Activity: Business or School/HEI Engagement › School Engagement
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Patterns in Biology: mechanisms, analysis and utility
Mort, R. (Organiser), Shih, B. (Organiser), Higham, J. (Organiser) & Sedda, L. (Participant)
10/07/2024Activity: Participating in or organising an event types › Symposium
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BLS at Furness STEM Show 2024
Jackson-Jones, L. (Organiser), Allinson, S. (Organiser), Shih, B. (Organiser), Hammond, J. (Presenter), Morris, J. (Presenter), Pawar, H. (Presenter), Wood, A. (Presenter), Hall, S. (Presenter), Quaye, B. (Presenter) & Metcalfe, F. (Presenter)
12/03/2024 → 13/03/2024Activity: Other activity types › Types of Public engagement and outreach - Festival/Exhibition
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UlverSTEM 2023
Jackson-Jones, L. (Organiser), Allinson, S. (Presenter), Hammond, J. (Presenter), Barnes, C. (Presenter), Morris, J. (Presenter), Thwaites, E. (Presenter), Butcher, C. (Presenter), Vochitu, E. (Presenter), Urbaniak, M. (Contributor) & Shih, B. (Contributor)
18/11/2023Activity: Other activity types › Types of Public engagement and outreach - Festival/Exhibition